DreEX6057948 @ danRer10
Exon Skipping
Gene
ENSDARG00000000380 | pde6a
Description
phosphodiesterase 6A, cGMP-specific, rod, alpha [Source:ZFIN;Acc:ZDB-GENE-030616-42]
Coordinates
chr14:24708158-24712591:-
Coord C1 exon
chr14:24712508-24712591
Coord A exon
chr14:24711030-24711195
Coord C2 exon
chr14:24708158-24708593
Length
166 bp
Sequences
Splice sites
3' ss Seq
ACTGCTCATCCCTCTTGCAGGAG
3' ss Score
11.6
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CCCATGATGGACCGGAACAAGGCGGAGGAACTTCCCAAACTGCAGTGTGGTTTTATTGATTTCGTCTGTTCTTTCGTTTACAAG
Seq A exon
GAGTTTTCTCGCTTCCATGTGGAGATCACACCAATGCTGGAGCGTCTGCTGAACAACAGAAAAGAATGGAACGCACTGAAGGAAATACATGAGGCCAAAGTAGCCAAGCTGGATGAGGCCAAAAAGGCTAAAGAAGAAGCACATGCTAACTCAGATCATAAACAAG
Seq C2 exon
GAAACTCTGTCCAACCCGCAGCTCAGTCCAAGACCTGTGTCATTTCCTAGACGTCAAGCAGCACAAAAACACATCGTAAGAATGTACGACAGTGTACCCATAATTTGGACCGCTTTTATTATTTCTCTCAGCAGGATGTCCTGTTAAATCGTTTTGTACTAGTCTTGAGCTTGTAAGTAAAGACATCCCTTTAGTGTTAGAAACAAACTATTACAATGTCTCTTTGACTTTTACAACAATAGCCATGACTGTCAATAGAAAGGTATTTTTAAAGCATTTAAGTACTTTATGGCTGAAACTGTACAGACTAGAGCATTCTTACGAAATAAAACATACATGGGAGTATATTGTGAATACATTTGCTAATTCTATATTGTATTTTTCCATTAATATTTATATGTAGAAATCTAAAAATAAACTGAAAAACTGCTAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000380-'22-24,'22-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.304 C2=0.438
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(10.8=100)
A:
PF0023314=PDEase_I=PD(7.6=33.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGATGGACCGGAACAAGG
R:
ACAAGCTCAAGACTAGTACAAAACGA
Band lengths:
257-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]