GgaEX6050555 @ galGal4
Exon Skipping
Gene
ENSGALG00000015373 | PDE6B
Description
Phosphodiesterase 6b subunit [Source:UniProtKB/TrEMBL;Acc:F1NA42]
Coordinates
chrZ:53313306-53315244:-
Coord C1 exon
chrZ:53315161-53315244
Coord A exon
chrZ:53314488-53314644
Coord C2 exon
chrZ:53313306-53313364
Length
157 bp
Sequences
Splice sites
3' ss Seq
GATGGCTGTGTTTTGGTCAGGAA
3' ss Score
5.73
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
CCCATGATGGACAGGAGGAAAGCTGCTGAACTCCCAAAGCTTCAAGTGGGTTTCATCGACTTTGTGTGCACATTTGTCTATAAG
Seq A exon
GAATTTTCACGTTTCCATGAGGAAATTCAGCCTATGCTCGATGGGCTGCTGAACAACAGGAATGAGTGGAAGACCCGTGCTGATGAGTACGATGCAAAGATGAAAGCTCTGGAGGAAGAGAAGAAAAAGGAGGAAGAGAAAATGGCTGCACAGAAAG
Seq C2 exon
ATGGAATAACCTGCAACGGAGGAACAGCTCCAACTTCAAAAACCTGTAGTATACTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015373-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.358 C2=0.316
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(10.8=100)
A:
PF0023314=PDEase_I=PD(7.6=35.8),PF141951=DUF4316=PU(87.0=88.7)
C2:
PF141951=DUF4316=PD(11.1=30.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGATGGACAGGAGGAAAGC
R:
AGTATACTACAGGTTTTTGAAGTTGG
Band lengths:
138-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]