BtaEX6034548 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001864 | NR4A3
Description
nuclear receptor subfamily 4, group A, member 3 [Source:HGNC Symbol;Acc:HGNC:7982]
Coordinates
chr8:65356670-65373695:+
Coord C1 exon
chr8:65356670-65356869
Coord A exon
chr8:65359607-65359785
Coord C2 exon
chr8:65373131-65373695
Length
179 bp
Sequences
Splice sites
3' ss Seq
CCGACGACTTTCTCTCGTAGGTC
3' ss Score
8.48
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TACTGTCCCACTGACCAGGCTGCTGCAGGCACGGATGCTGAGCATGTACAACAGTTCTACAACCTTCTAACAGCCTCCATTGATGTATCCAGAAGCTGGGCAGAAAAGATTCCCGGATTTACTGATCTCCCCAAAGAAGATCAGACATTACTTATAGAATCAGCCTTTTTGGAGCTGTTTGTTCTCAGACTTTCCATCAG
Seq A exon
GTCAAACACTGCTGAAGATAAGTTTGTGTTCTGCAATGGACTTGTCCTGCATCGACTTCAGTGCCTTCGTGGATTTGGGGAGTGGCTCGACTCCATTAAAGACTTTTCCTTAAGTTTGCAGAGCCTGAACCTTGATATCCAAGCCTTAGCCTGCCTGTCAGCACTGAGCATGGTCACAG
Seq C2 exon
AACGACATGGGTTAAAAGAACCAAAGAGAGTGGAGGAGCTATGCAACAAGATCACAAGCAGCTTAAAAGAGCACCAGAGTAAGGGCCAGGCTTTGGAGCCCACTGAGCCCAAGGTCCTGCGTGCCCTGGTAGAACTGAAGAAGATCTGCACCCTGGGCCTCCAGCGCATCTTCTACCTGAAGCTGGAAGACTTGGTGTCCCCACCTTCCATCATCGACAAGCTCTTCCTGGACACCCTGCCTTTCTGAGCAGGAGCAGCCTGAGCAGGGAGCTGCCTCATCTGCTAGCAGCTGCTTGCTAAGTAGCAGAGGGAGGGGGTCTGGACACCTACCATTTTCTGTCCTTCCTTAAGAGAGAAAACAAGCTCCTGTTGAAATGAAAGACTTTTTTTTTTTTTTTCTGGCACTTTTCCTTACATCTGAAAGCCAGAAAACTTGCAAAGTATTGTGTTGGGGTTGTGTTTTATATTTAGGTTTTGGGGTTGGGATGGGAGGTGGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001864-'8-7,'8-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(33.3=91.0)
A:
PF0010425=Hormone_recep=FE(32.8=100)
C2:
PF0010425=Hormone_recep=PD(33.3=73.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCAGAAAAGATTCCCGG
R:
CTTCAGTTCTACCAGGGCACG
Band lengths:
245-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]