DreEX0051458 @ danRer10
Exon Skipping
Gene
ENSDARG00000055854 | nr4a3
Description
nuclear receptor subfamily 4, group A, member 3 [Source:ZFIN;Acc:ZDB-GENE-070824-4]
Coordinates
chr16:27421369-27434715:+
Coord C1 exon
chr16:27421369-27421560
Coord A exon
chr16:27428438-27428616
Coord C2 exon
chr16:27432985-27434715
Length
179 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCGTTTTCTTAGGTC
3' ss Score
11.96
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TGCGGTGGAGCCCGTGGGTCTGTCTGAGTCTCAGCAGATCCAGATGTTTTACAGAGTGTTAACCGGCTCTATGGAGGTGACGCGCTGCTGGGCTGAACGGCTGCCTGGATTCTCTGAGCTTCACCACGACGACCAGAACATGCTGATTGACTCTGCCTTCCTTGAGCTTTTCGTGCTTCGCCTCGCCAACAG
Seq A exon
GTCTTTGCTGGTGGATGAGAAGTTTGTGTTTTGTACGGGGCTGGTCCTGCACCGGCTGCAGTGTCTGCGTGGCTTCGGAGAGTGGCTAGACTCTATTCGAGACTTCAGTGCCCACCTCCAGGAACTCAACCTCGACATGCCTGCGTTCTCCTGCTTGTGCGCCTTAGTGTTGCTAACAG
Seq C2 exon
AACAATGTCCCGGTCTAAAGGAGCCCAAAAAAGTGGAGGAGCTGCAATCCAAACTGATCTGCTGTCTGCGAGACCACCTGAACTCCATCAATGCTGGAGGTGTGGCTTCCACCGGCAAGGCCCCACCCCCAGTGGGGGCTGTGCTGGGCTTAAGGGCGGAGCTTCGGTCTCAGCGTACGCAAGGCCTACAAAGGATCTTCTACCTGAAGCTGGAGGACCTGGTCCCACCCCCACCACTCATCGATAGGTTCTTGGACACCTTGCCCTATTGATGGCCACGCCCACATTTTTTTGCACACTCGCTCAGACACGCCCACAGCGACTATAAACTCACCCTGGGAGGGACAGAGCCAGTAGCTAACAGTGACACTGAACTCGATTTGCCCCAAATCAAACGTGTCTGAGGAGAAACCAATCATATAAGCGCTTTTAATCTCTGCTCTGCGCCTGATAATGTAGATACAAGCCAGGGTTTGAGTGTTTCTGACGTACAGTCTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055854_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(37.4=89.2)
A:
PF0010425=Hormone_recep=FE(38.7=100)
C2:
PF0010425=Hormone_recep=PD(23.2=39.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGCTTTTCGTGCTTCGC
R:
CAGGTCCTCCAGCTTCAGGTA
Band lengths:
253-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]