RnoEX6021778 @ rn6
Exon Skipping
Gene
ENSRNOG00000005964 | Nr4a3
Description
nuclear receptor subfamily 4, group A, member 3 [Source:RGD Symbol;Acc:61882]
Coordinates
chr5:63804027-63821637:+
Coord C1 exon
chr5:63804027-63804226
Coord A exon
chr5:63807453-63807631
Coord C2 exon
chr5:63819588-63821637
Length
179 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCTGCCCACCCCTAGGTC
3' ss Score
11.68
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TACTGTCCCACCGACCAGGCCACTGCGGGCACAGACGCTGAGCACGTGCAGCAGTTCTACAACCTTCTGACGGCCTCCATCGACGTGTCCAGAAGCTGGGCAGAAAAGATCCCCGGATTCACTGATCTCCCCAAAGAAGATCAGACGTTACTTATAGAATCAGCCTTTTTGGAGCTGTTCGTTCTTAGACTTTCTATCAG
Seq A exon
GTCAAACACTGCTGAAGATAAGTTTGTGTTCTGCAATGGACTTGTCCTGCACCGACTTCAGTGCCTTCGCGGATTTGGGGAGTGGCTCGACTCCATTAAAGACTTTTCTTTAAATTTGCAGAGCCTGAACCTTGATATCCAAGCCTTAGCCTGCCTGTCAGCACTGAGTATGATCACAG
Seq C2 exon
AGCGACATGGGTTAAAAGAACCAAAGAGAGTGGAGGAGCTATGCAACAAGATCACAAGCAGCTTAAAGGACCACCAGAGGAAGGGACAGGCTCTGGAGCCCTCAGAGCCCAAGGTCCTGCGCGCACTGGTGGAACTGAGGAAGATCTGCACCCAGGGCCTCCAGCGCATCTTCTACCTGAAGCTGGAGGACTTGGTGTCCCCACCTTCTGTCATCGACAAGCTCTTCCTTGATACCCTGCCTTTCTGAGCAGGGGAAGCCTGAGCAGAGAGCTACTTGCTCTGCTGGCACTGGTCATTAAGTGAGCAAAAGGATGGGTTTGAACACCTGCCCCTCTATCCTTCCTCCAGGGGAAAAAGCAGCTCCCATAGAAAGCAAAGACTTTTTTTTTTTTCCTGGCACCTTTCCTTACAACCTAAAGCCAGAAACCTTGCAGAGTATTGTGTTGGGGTTGTGTTTTATATTTAGGCTTTGGTGGGTGGGCTGGGAGGGGGTAAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005964-'11-9,'11-7,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.012
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(33.0=92.5)
A:
PF0010425=Hormone_recep=FE(31.9=100)
C2:
PF0010425=Hormone_recep=PD(34.6=78.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCGGATTCACTGATCTCC
R:
TGGGTGCAGATCTTCCTCAGT
Band lengths:
245-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]