GgaEX0020207 @ galGal3
Exon Skipping
Gene
ENSGALG00000013568 | E1BYS2_CHICK
Description
NA
Coordinates
chr2:91687780-91699193:-
Coord C1 exon
chr2:91698994-91699193
Coord A exon
chr2:91697476-91697654
Coord C2 exon
chr2:91687780-91688123
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTCAATTATTTTTATTTGAGGTC
3' ss Score
2.49
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TACTGTTCCACCGATCAGGCTGCTGCAGGCACAGATGCAGAACATGTACAACAGTTCTATAATCTTCTGACTGCCTCCATTGACATATCCAGAGGCTGGGCAGAAAAAATTCCAGGATTTACTGACCTCCCGAAAGAAGATCAGACATTACTCATAGAATCAGCTTTTTTGGAGCTGTTTGTACTAAGACTCTCCATCAG
Seq A exon
GTCTGATACTGCTGAGGATAAGTTTGTATTCTGCAATGGACTTGTGCTTCATAGACTTCAGTGCCTTCGTGGATTTGGGGAGTGGCTCGACTCTATTAAAGACTTTTCCTTAAACTTAAAGAGCCTTAACCTTGATATCCCAGCCTTAGCAAGTTTATCAGCTCTAACTATGATTACAG
Seq C2 exon
AACGACATGGCTTAAAAGAACCAAAGAAAGTGGAAGAGCTATGCAACAAGATCACAAGCAGTTTGAAAGATCACTTAACTTTCAGTTGCCAAAACAAAGGACAGCCGCTCGAGTCCGCAGAGCCTAAGGTACTGGGTGTTCTTGCTGACTTGCGTTCTCTCTGCACACTGGGACTGCAGCGCATCTTTTACCTGAAACTGGAAGATTTGGTGCCAGCCCCTTCCATTATCGACAGGCTGTTTCTGGACACCTTGCCCTTCTGAGTCCAGCCACCCTCCTGAAAGGCAAATGCCCACCAGAGCAGGCAAACGGATCGTGACTTACCGCTAACATTTCTGCCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013568-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(31.2=88.1)
A:
PF0010425=Hormone_recep=FE(31.7=100),PF150191=C9orf72-like=PU(17.0=27.9)
C2:
PF0010425=Hormone_recep=PD(36.5=78.4),PF150191=C9orf72-like=PD(82.0=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGATTTACTGACCTCCCG
R:
GCAAGTCAGCAAGAACACCCA
Band lengths:
242-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]