GgaEX0020207 @ galGal4
Exon Skipping
Gene
ENSGALG00000013568 | NR4A3
Description
nuclear receptor subfamily 4, group A, member 3 [Source:HGNC Symbol;Acc:HGNC:7982]
Coordinates
chr2:89372989-89384321:-
Coord C1 exon
chr2:89384122-89384321
Coord A exon
chr2:89382604-89382782
Coord C2 exon
chr2:89372989-89373251
Length
179 bp
Sequences
Splice sites
3' ss Seq
TTCAATTATTTTTATTTGAGGTC
3' ss Score
2.49
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TACTGTTCCACCGATCAGGCTGCTGCAGGCACAGATGCAGAACATGTACAACAGTTCTATAATCTTCTGACTGCCTCCATTGACATATCCAGAGGCTGGGCAGAAAAAATTCCAGGATTTACTGACCTCCCGAAAGAAGATCAGACATTACTCATAGAATCAGCTTTTTTGGAGCTGTTTGTACTAAGACTCTCCATCAG
Seq A exon
GTCTGATACTGCTGAGGATAAGTTTGTATTCTGCAATGGACTTGTGCTTCATAGACTTCAGTGCCTTCGTGGATTTGGGGAGTGGCTCGACTCTATTAAAGACTTTTCCTTAAACTTAAAGAGCCTTAACCTTGATATCCCAGCCTTAGCAAGTTTATCAGCTCTAACTATGATTACAG
Seq C2 exon
AACGACATGGCTTAAAAGAACCAAAGAAAGTGGAAGAGCTATGCAACAAGATCACAAGCAGTTTGAAAGATCACTTAACTTTCAGTTGCCAAAACAAAGGACAGCCGCTCGAGTCCGCAGAGCCTAAGGTACTGGGTGTTCTTGCTGACTTGCGTTCTCTCTGCACACTGGGACTGCAGCGCATCTTTTACCTGAAACTGGAAGATTTGGTGCCAGCCCCTTCCATTATCGACAGGCTGTTTCTGGACACCTTGCCCTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013568_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(31.2=88.1)
A:
PF0010425=Hormone_recep=FE(31.7=100),PF150191=C9orf72-like=PU(17.0=27.9)
C2:
PF0010425=Hormone_recep=PD(36.5=78.4),PF150191=C9orf72-like=PD(82.0=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGATTTACTGACCTCCCG
R:
GCAAGTCAGCAAGAACACCCA
Band lengths:
242-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]