HsaEX6062177 @ hg38
Exon Skipping
Gene
ENSG00000119508 | NR4A3
Description
nuclear receptor subfamily 4 group A member 3 [Source:HGNC Symbol;Acc:HGNC:7982]
Coordinates
chr9:99844649-99865051:+
Coord C1 exon
chr9:99844649-99844848
Coord A exon
chr9:99847437-99847615
Coord C2 exon
chr9:99863620-99865051
Length
179 bp
Sequences
Splice sites
3' ss Seq
GTCTTCCTCTCACCTCCCAGGTC
3' ss Score
11.41
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TACTGTCCCACTGACCAGGCTGCTGCAGGCACAGATGCTGAGCATGTGCAACAATTCTACAACCTCCTGACAGCCTCCATTGATGTATCCAGAAGCTGGGCAGAAAAGATTCCGGGATTTACTGATCTCCCCAAAGAAGATCAGACATTACTTATTGAATCAGCCTTTTTGGAGCTGTTTGTCCTCAGACTTTCCATCAG
Seq A exon
GTCAAACACTGCTGAAGATAAGTTTGTGTTCTGCAATGGACTTGTCCTGCATCGACTTCAGTGCCTTCGTGGATTTGGGGAGTGGCTCGACTCTATTAAAGACTTTTCCTTAAATTTGCAGAGCCTGAACCTTGATATCCAAGCCTTAGCCTGCCTGTCAGCACTGAGCATGATCACAG
Seq C2 exon
AAAGACATGGGTTAAAAGAACCAAAGAGAGTCGAAGAGCTATGCAACAAGATCACAAGCAGTTTAAAAGACCACCAGAGTAAGGGACAGGCTCTGGAGCCCACCGAGTCCAAGGTCCTGGGTGCCCTGGTAGAACTGAGGAAGATCTGCACCCTGGGCCTCCAGCGCATCTTCTACCTGAAGCTGGAAGACTTGGTGTCTCCACCTTCCATCATTGACAAGCTCTTCCTGGACACCCTACCTTTCTAATCAGGAGCAGTGGAGCAGTGAGCTGCCTCCTCTCCTAGCACCTGCTTGCTACGCAGCAAAGGGATAGGTTTGGAAACCTATCATTTCCTGTCCTTCCTTAAGAGGAAAAGCAGCTCCTGTAGAAAGCAAAGACTTTCTTTTTTTTCTGGCTCTTTTCCTTACAACCTAAAGCCAGAAAACTTGCAGAGTATTGTGTTGGGGTTGTGTTTTATATTTAGGCATTGGGGGATGGGGTGGGAGGGGGTTATAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119508-'20-23,'20-18,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(32.8=91.0)
A:
PF0010425=Hormone_recep=FE(32.3=100)
C2:
PF0010425=Hormone_recep=PD(34.4=77.1)
Main Skipping Isoform:
ENST00000618101fB21362
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGGGCAGAAAAGATTCCG
R:
TCCTCAGTTCTACCAGGGCAC
Band lengths:
248-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains