MmuEX6093365 @ mm9
Exon Skipping
Gene
ENSMUSG00000028341 | Nr4a3
Description
nuclear receptor subfamily 4, group A, member 3 [Source:MGI Symbol;Acc:MGI:1352457]
Coordinates
chr4:48080535-48099317:+
Coord C1 exon
chr4:48080535-48080734
Coord A exon
chr4:48083862-48084040
Coord C2 exon
chr4:48095977-48099317
Length
179 bp
Sequences
Splice sites
3' ss Seq
CCTCCTCTGCCCACCCCTAGGTC
3' ss Score
11.68
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TACTGTCCCACCGACCAGGCCACTGCAGGCACAGATGCTGAGCACGTGCAACAGTTCTACAACCTTCTGACGGCCTCCATTGACGTGTCCAGAAGCTGGGCAGAAAAGATCCCAGGATTCACTGATCTCCCCAAAGAAGATCAGACGTTACTTATAGAATCAGCCTTTTTGGAGCTGTTTGTTCTTAGACTTTCCATCAG
Seq A exon
GTCAAACACTGCTGAAGATAAGTTTGTGTTCTGCAATGGACTTGTCCTGCATCGACTTCAGTGCCTTCGAGGATTTGGGGAGTGGCTCGACTCCATTAAAGACTTTTCTTTAAACTTGCAGAGCCTGAACCTTGATATCCAAGCCTTAGCCTGCCTGTCAGCACTGAGTATGATCACAG
Seq C2 exon
AGCGACATGGGTTAAAAGAACCAAAGAGAGTGGAGGAGCTATGCACCAAGATCACAAGCAGCTTAAAGGACCACCAGAGGAAGGGACAGGCTCTGGAGCCCTCGGAGCCTAAGGTCCTGCGCGCGCTGGTAGAACTGAGAAAGATCTGTACCCAGGGCCTCCAGCGCATCTTCTACCTGAAGCTAGAGGACTTGGTACCTCCACCTTCTGTCATCGACAAGCTCTTCCTTGACACCCTGCCTTTCTGAGCAGGGGAAGCCTGAGCAGAGAGCTACTTGCTCTGCTGGCACCTGATCATTAAGTGAGCAAAAGAATGGGTTTGAACACCTTCCACACTCACTGTCCTTCCTTCAGGGGAAAAGCAGCTCCCGTAGAAAGCAAAGACTTTTTTTTCTTTTCCTGGCACCTTTCCTTACAACCTAAAGCCAGAAACCTTGCAGAGTATCGTGTTGGGGTTGTGTTTTATATTTAGGCTTTGGTGGGTGGGTTGGGAGGGGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028341-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=PU(33.0=92.5)
A:
PF0010425=Hormone_recep=FE(31.9=100)
C2:
PF0010425=Hormone_recep=PD(34.6=78.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCAGAAAAGATCCCAGGA
R:
TTTCTCAGTTCTACCAGCGCG
Band lengths:
246-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: