BtaEX6036090 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019807 | COL27A1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MTP1]
Coordinates
chr8:105183926-105188201:+
Coord C1 exon
chr8:105183926-105183952
Coord A exon
chr8:105187133-105187198
Coord C2 exon
chr8:105188033-105188201
Length
66 bp
Sequences
Splice sites
3' ss Seq
CCTGTCTTCTCTCTGCGCAGCAA
3' ss Score
10.29
5' ss Seq
GAGGTGCCA
5' ss Score
1.44
Exon sequences
Seq C1 exon
GGTCCTCCAGGGAGCACTATCCACTTC
Seq A exon
CAACAAGATGACCTTGGGGCAGCTTTCCAGACGTGGATGGATACAAGTGGAGCACTGAGAGCAGAG
Seq C2 exon
GGTTACAGCCATCCGGACCGGCTGGTGCTGGACCAGGGAGGGGAGATCTTTAAAACCTTACACTACCTCAGCAACCTCATCCAGAGCATTAAGACGCCCCTGGGCACCAAAGAGAACCCCGCCCGGGTCTGCCGGGACCTCATGGACTGTGAGCAGAAGATGGTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019807-'60-56,'60-54,63-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.455 C2=0.088
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(9.8=66.7)
A:
NO
C2:
PF0141013=COLFI=PU(38.6=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAGGGAGCACTATCCACT
R:
TCTGCTCACAGTCCATGAGGT
Band lengths:
180-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]