RnoEX6022065 @ rn6
Exon Skipping
Gene
ENSRNOG00000007657 | Col27a1
Description
collagen type XXVII alpha 1 chain [Source:RGD Symbol;Acc:735115]
Coordinates
chr5:79163362-79165950:+
Coord C1 exon
chr5:79163362-79163388
Coord A exon
chr5:79164975-79165040
Coord C2 exon
chr5:79165779-79165950
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGTCTTTTTTTCTTGCACAGCAA
3' ss Score
9.1
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GGCCCTCCTTGGCATCCTGTCCAGTTT
Seq A exon
CAACAAGATGACCTTGAGGCAGCTTTCCAAACGTGGATGGATGCTCACGGAGCAGTCAGATTGGAG
Seq C2 exon
CAGGGGTACAGCTATCCGGACCAGCTGATGCTAGACCAGGGAGGGGAGATCTTCAAAACCTTACACTACCTCAGCAACCTCATCCAGAGCATTAAGACGCCCTTGGGCACCAAGGAGAACCCAGCCCGGGTCTGCCGGGACCTCATGGACTGCGAACAGAAGATGGCGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007657-'77-79,'77-77,79-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.273 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(7.9=55.6)
A:
NO
C2:
PF0141013=COLFI=PU(38.6=46.6)
Main Skipping Isoform:
ENSRNOT00000010333fB3392
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGGCATCCTGTCCAGTT
R:
CTGTTCGCAGTCCATGAGGTC
Band lengths:
181-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]