GgaEX0009923 @ galGal3
Exon Skipping
Gene
ENSGALG00000006958 | COL27A1
Description
NA
Coordinates
chr17:5421153-5421891:+
Coord C1 exon
chr17:5421153-5421179
Coord A exon
chr17:5421383-5421448
Coord C2 exon
chr17:5421723-5421891
Length
66 bp
Sequences
Splice sites
3' ss Seq
GTGTGTTTCCCCCACACTAGCAA
3' ss Score
4.63
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GGACCGCCGGGATTTCCAGCTTCATTT
Seq A exon
CAACAAGATGGCTTTGGGGCTGCTTTCCGGACACTGGTTGACTCCAACGTGGCACTCAAGACAGAG
Seq C2 exon
GGTTACCAACATCCAGACCTTCTCATGCTGGACCATGGAGGGGAGATCTTTAAGACTCTACACTACCTCAGCAACCTCATTCAGAGCATCAAGAGACCCCTGGGCACCAAGGAAAACCCTGCACGCATCTGCCGAGACCTCATGAACTGTGAACAGAAGATGAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006958-'73-65,'73-64,74-65
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.091 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(12.1=100)
A:
PF0139113=Collagen=PD(3.0=9.1)
C2:
PF0141013=COLFI=PU(40.3=47.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGGATTTCCAGCTTCATT
R:
CACAGTTCATGAGGTCTCGGC
Band lengths:
173-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]