BtaEX6036305 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112471640-112476809:+
Coord C1 exon
chr8:112471640-112471845
Coord A exon
chr8:112473785-112473977
Coord C2 exon
chr8:112476679-112476809
Length
193 bp
Sequences
Splice sites
3' ss Seq
GTGTATGTGAATTTTTTTAGAGA
3' ss Score
6.3
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
GAGAATGAGGTTTCTAGATTGGAAGACATAATACAGCATTTAAAATCAAAGAAGCAGGAACAGAGGATGAGAGTATCCAAGCGGCAGTCTGAGAAAGAAATAGAAGAACTGCATCATAATATTGATGAACTTCTGCAAGAGAAGAAAGGCTTAGAGCATGAAGTAGAAGAATTACATAGAACCATCCAGAAACATCAACAGCGAAA
Seq A exon
AGACTTCATTGATGGAAATGTTGAGAGTCTTATGAATGAGCTAGAAATAGAAAAATCACTCAAGCACCATGAAGATATTGTAGATGAAATTGAGTGCATCGAGAAGACTCTCCTGAAACGTCGAGCAGAGCTCAGGGAGGCTGACCGACTGCTGGCGGAAGCCGAGAGTGAACTTTCATGCACAACAGAGAAA
Seq C2 exon
ACGAAAAATGCTGTTGAAAAGTTCACTGATGCCAAGAGGAATTTGTTGCAAACTGAGAAAGATGCTGAGGAGTTAGAAAGGAGAGCTCAGGAAACAGCTGTTAGCCTTGTCAAGGCTGATCAGCAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417-'31-42,'31-40,33-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.981 A=0.231 C2=0.432
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSBTAT00000061592fB1817
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGAGTATCCAAGCGGC
R:
CAGCTGTTTCCTGAGCTCTCC
Band lengths:
242-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]