GgaEX7009849 @ galGal4
Exon Skipping
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8365017-8366069:+
Coord C1 exon
chr17:8365017-8365225
Coord A exon
chr17:8365409-8365601
Coord C2 exon
chr17:8365939-8366069
Length
193 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCTTGGGCTTTTAGGGA
3' ss Score
9.7
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GAGAGTGAAGTCTCAAGGTTAGAAGACACTGTGCAGCATTTAAAGTCTCGGAAATACAGAGATAAATGGTCAGAGGCAGCTGAGCATAAATGCAAGAATGAAATGGAAAAAATACATCAAAACATAGAAGATCTTCTGCATGAAAGAGAAGAGCTGGAACGTGAAGTAGCAGAGCTACAAAGAACAGCTCAAAAACGTAACAAATGCAA
Seq A exon
GGACTTCATTGAAGGGTATACTGAAAATTTAATGGCAGAACTACAGTTAGAAAAATCTCTTAAGCATCATGAAGATGTTGCAGAAGAAATTGAATGTATAGAGAAGACTCTTCTGAAACGCCGAGCAGAGCTTAGAGAGGCAGATAGGCTTCTTGCAGAAGCTGAAGTGGAACTTGAGAGCACACGGGGAAAG
Seq C2 exon
ACTAAAGACACTATTCAAAAGTACAATCATGCCAAACAACATTTGTTCCGTACTGAAACTGAGGCAGAGGAGCTAGAGCGAAGGGCTCAGGAAATGGCCACTAAACTTGTGAAAGCAGATCAGCAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513-'43-36,'43-35,44-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.215 C2=0.750
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGGTCAGAGGCAGCTGAG
R:
TTAGTGGCCATTTCCTGAGCC
Band lengths:
250-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]