DreEX0002920 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62725726-62727575:-
Coord C1 exon
chr5:62727418-62727575
Coord A exon
chr5:62726863-62727025
Coord C2 exon
chr5:62725726-62725856
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTCTATATTTGGTTGATCAGGAG
3' ss Score
4.45
5' ss Seq
AAGGTCTGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
GAGCGAGATCTGAAGAAGGCAGAGCGTAGGCTGAGAGAGGAGTGTGCAGACAGAGCTCACAGTGAACAAGAACAGCACACACTGCAGGACAAAACAGCAGAGCTACAGCAGGAAATCAAGCATCTGCGCAGGACTGTCCGCACACTGCAGCGCCACAC
Seq A exon
GAGTGGTCTGGAAAGCACTTTATCACATGCAGAAGAAGAGCAGTGTGTGCTGGGAGAGGTGGAGTGTTTGGAGAAGACCCTGCTGAAGCGCAGAGCCGAGCTCAGAGAGGCTGACCGACGGCTGCTGGAGGCTGATGCACAGCTTAAAAACACTCAAACCAAG
Seq C2 exon
ACTGAAGAAAACATTCATCACTATAATGAGGCCAAAAAGAGAATGGAAGAGACAGAACGAGAGCTGGCAGAGATAGAAAAGAGAGCTCAAGACAGTGGAAAACTTCTAGTGCAAAGCAAACAACAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.509 C2=0.617
Domain overlap (PFAM):
C1:
PF138631=DUF4200=FE(73.6=100)
A:
PF138631=DUF4200=PD(20.8=27.3)
C2:
PF041569=IncA=PU(17.9=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGACAGAGCTCACAGTG
R:
CAGCTGTTGTTTGCTTTGCACT
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]