MmuEX0010880 @ mm10
Exon Skipping
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35155251-35160378:+
Coord C1 exon
chr2:35155251-35155459
Coord A exon
chr2:35157596-35157788
Coord C2 exon
chr2:35160248-35160378
Length
193 bp
Sequences
Splice sites
3' ss Seq
GATATTTATGTAATTTTTAGGGA
3' ss Score
7.37
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GAGAATGAAGTGTCTAGACTAGAAGACATAATGCAGCACTTAAAATCAAAACAGCGGGAAGAGCGGCGGCAGAAAGCATCCACGCAGCATTCTGAGGAAGAAGTGGATGGGCTGCACCGTGATATTGATGACCTTTTGCAAGAGAAGAAAGAATTAGAACTTGAAGTAGAAGAATTACATAGAACTATTGAGAGACATCAACAACGAAA
Seq A exon
GGACTTCATTGATGGACATGTTGAGAATCTTATGACTGAACTAGAAATAGAAAAGTCTCTCAAACATCATGAGGATATCGTAGATGAAATTGAGTGCCTAGAGAAAACTCTCCTGAAACGTCGCTCGGAACTCAGGGAAGCTGACCGACTTCTGGCGGAAGCCGAGAATGAGCTTGCATGCACCAAGGAGAAG
Seq C2 exon
ACAAAGAGTGCTGTTGAAAAATTCACTGATGCCAAGAGAAATTTATTACAAACCGAGTCAGACGCTGAGGCACTAGAAAAGAGAGCCCAGGAGACTGCACTTAACCTTGTGAAAGCAGAGCAGCAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110_MULTIEX4-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=0.240 C2=0.205
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCATCCACGCAGCATTC
R:
GTTAAGTGCAGTCTCCTGGGC
Band lengths:
243-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types