HsaEX6062837 @ hg19
Exon Skipping
Gene
ENSG00000119397 | CEP110
Description
centriolin [Source:HGNC Symbol;Acc:1858]
Coordinates
chr9:123914763-123919878:+
Coord C1 exon
chr9:123914763-123914971
Coord A exon
chr9:123916999-123917191
Coord C2 exon
chr9:123919748-123919878
Length
193 bp
Sequences
Splice sites
3' ss Seq
GTGTATATATTATTTTTTAGGGA
3' ss Score
9.87
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GAGAATGAAGTTTCTAGATTAGAAGACATAATGCAGCATTTAAAATCAAAGAAGCGGGAAGAAAGGTGGATGAGAGCATCCAAGCGGCAGTCGGAGAAAGAAATGGAAGAACTGCATCATAATATTGATGATCTTTTGCAAGAGAAGAAAAGCTTAGAGTGTGAAGTAGAAGAATTACATAGAACTGTCCAGAAACGTCAACAGCAAAA
Seq A exon
GGACTTCATTGATGGAAATGTTGAGAGTCTTATGACTGAACTAGAAATAGAAAAATCACTCAAACATCATGAAGATATTGTAGATGAAATTGAGTGCATTGAGAAGACTCTTCTGAAACGTCGCTCAGAGCTCAGGGAAGCTGACCGACTCCTGGCAGAGGCTGAGAGTGAACTTTCATGCACTAAAGAAAAG
Seq C2 exon
ACAAAAAATGCTGTTGAAAAGTTCACTGATGCCAAGAGAAGTTTATTGCAAACTGAGTCAGATGCTGAGGAATTAGAAAGGAGAGCTCAGGAAACTGCTGTTAACCTCGTCAAAGCTGATCAGCAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-'38-35,'38-34,39-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.722 A=0.109 C2=0.261
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGAAGAAAGGTGGATGAG
R:
AGCAGTTTCCTGAGCTCTCCT
Band lengths:
255-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)