RnoEX0022605 @ rn6
Exon Skipping
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14348198-14353369:+
Coord C1 exon
chr3:14348198-14348406
Coord A exon
chr3:14350507-14350699
Coord C2 exon
chr3:14353239-14353369
Length
193 bp
Sequences
Splice sites
3' ss Seq
GATATTTATGTAATTTTTAGGGA
3' ss Score
7.37
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GAGAATGAGGTGTCTAGACTAGAAGACATAACACACCACTTAAAATCAAAACACCAGGAAGAGCGGTGGCTGAAAACATCCAGGCAGCATCCTGAGAAAGAGGTGGAAGAGCTACACCGCAACATCGATGACCTTGTGCAAGAGAAGAAGGAGTTAGAGCTCGAGGTAGAGGAATTACACAGAACCGTTGAGAGGCATCAACAACGGAG
Seq A exon
GGACTTCATTGATGGAAACGTTGAGAATCTAATGACTGAACTAGAAATAGAAAAGTCTCTCAAACATCACGAGGATATTGTAGATGAAATTGAGTGCCTAGAGAAAACTCTCCTGAAACGTCGCTCGGAGCTCAGGGAAGCTGACCGACTCCTGGCAGAAGCGGAGAGTGAGCTCGCATGCACCAAGGAGAAG
Seq C2 exon
ACAAAGAGTGCTGTCGAAAAGTTCACTGATGCCAAGAGAAATTTATTACAAACTGAGTCAGACGCTGAGGCATTAGAAAAGAGAGCCCAGGAGACTGCACTTAACCTTGTGAAAGCAGAGCAGCAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-'37-54,'37-49,38-54
Average complexity
S
Mappability confidence:
92%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.771 A=0.123 C2=0.205
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGAAAACATCCAGGCAG
R:
GTTAAGTGCAGTCTCCTGGGC
Band lengths:
248-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]