HsaEX6062837 @ hg38
Exon Skipping
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121152485-121157600:+
Coord C1 exon
chr9:121152485-121152693
Coord A exon
chr9:121154721-121154913
Coord C2 exon
chr9:121157470-121157600
Length
193 bp
Sequences
Splice sites
3' ss Seq
GTGTATATATTATTTTTTAGGGA
3' ss Score
9.87
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
GAGAATGAAGTTTCTAGATTAGAAGACATAATGCAGCATTTAAAATCAAAGAAGCGGGAAGAAAGGTGGATGAGAGCATCCAAGCGGCAGTCGGAGAAAGAAATGGAAGAACTGCATCATAATATTGATGATCTTTTGCAAGAGAAGAAAAGCTTAGAGTGTGAAGTAGAAGAATTACATAGAACTGTCCAGAAACGTCAACAGCAAAA
Seq A exon
GGACTTCATTGATGGAAATGTTGAGAGTCTTATGACTGAACTAGAAATAGAAAAATCACTCAAACATCATGAAGATATTGTAGATGAAATTGAGTGCATTGAGAAGACTCTTCTGAAACGTCGCTCAGAGCTCAGGGAAGCTGACCGACTCCTGGCAGAGGCTGAGAGTGAACTTTCATGCACTAAAGAAAAG
Seq C2 exon
ACAAAAAATGCTGTTGAAAAGTTCACTGATGCCAAGAGAAGTTTATTGCAAACTGAGTCAGATGCTGAGGAATTAGAAAGGAGAGCTCAGGAAACTGCTGTTAACCTCGTCAAAGCTGATCAGCAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-'56-62,'56-60,57-62
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.758 A=0.117 C2=0.298
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGGAAGAAAGGTGGATGAG
R:
AGCAGTTTCCTGAGCTCTCCT
Band lengths:
255-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains