BtaEX6036311 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112460810-112462608:+
Coord C1 exon
chr8:112460810-112460955
Coord A exon
chr8:112461550-112461757
Coord C2 exon
chr8:112462429-112462608
Length
208 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTCCCCCCTTAGCAGAAT
3' ss Score
7.34
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
GATGACAATAACCTGTTAAAACAGCAACTTAAAGATTTCCAGAATCACCTTAATCATGTAGCTGATGGTCTGATTCGTCCAGAAGAAGTGGCAGCTCGTGTAGATGAAGTAAGGAGAAAATTGAAATCAGGAGCTGGAGAGATGAG
Seq A exon
AATCCACAGTCCTTCAGATGTCTTAGGGAAAAGTCTTGCTGACTTGCAGATACAATTCAGTGAAATGCTGACACGTTCTCAGTGGGAGAAAGAGGAAGCCCAAGGGAGGGAAAGAAAACTCCAAGAAGAAATGGCTCTGCATCAGGAGAAGCTGGCGGACGGACAGGAAGCATTCAGGCAGGCCTGTGAGAGAGCACTAGAAGCTAGG
Seq C2 exon
ATTAATTTTGACAAGAGGCAACATGAAGCAAGAATTCAGCAGTTAGAGAATGAGATTCACTATTTACAAGAAAATCTGAAAAGTATGGAGGAAATCCAAGGGCTTACAGATCTGCAACTGCAGGAAGCTGATGAAGAGAAGGAGAGAATTCTAGCCCAACTCCAGGAGTTAGAGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417-'20-26,'20-24,22-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=0.414 C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTTAAAGATTTCCAGAATCACC
R:
ACTCCTGGAGTTGGGCTAGAA
Band lengths:
292-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]