HsaEX0014655 @ hg19
Exon Skipping
Gene
ENSG00000119397 | CEP110
Description
centriolin [Source:HGNC Symbol;Acc:1858]
Coordinates
chr9:123902919-123904548:+
Coord C1 exon
chr9:123902919-123903064
Coord A exon
chr9:123903659-123903866
Coord C2 exon
chr9:123904369-123904548
Length
208 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCCCCTCCTTACTAGCAT
3' ss Score
7.29
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GATGACAATAATCTGTTAAAACAGCAACTTAAAGATTTCCAGAATCACCTTAACCATGTGGTTGATGGTTTGGTTCGTCCAGAAGAAGTGGCAGCTCGTGTGGATGAGCTAAGAAGAAAACTGAAATTAGGAACTGGGGAAATGAA
Seq A exon
CATCCATAGTCCTTCAGATGTCTTAGGGAAAAGTCTTGCTGATTTACAGAAACAATTCAGTGAAATTCTTGCACGCTCCAAGTGGGAAAGAGATGAAGCACAAGTTAGAGAGAGAAAACTCCAAGAAGAAATGGCTCTGCAGCAAGAGAAACTGGCAACTGGACAAGAAGAGTTCAGGCAGGCCTGTGAGAGAGCCCTGGAAGCAAGA
Seq C2 exon
ATGAATTTTGATAAGAGGCAACATGAAGCAAGAATCCAGCAAATGGAGAATGAAATTCACTATTTGCAAGAAAATCTAAAAAGTATGGAGGAAATCCAAGGCCTTACAGATCTCCAACTTCAGGAAGCTGATGAAGAGAAGGAGAGAATTCTGGCCCAACTCCGAGAGTTAGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=0.300 C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAACTTAAAGATTTCCAGAA
R:
CTCGGAGTTGGGCCAGAATTC
Band lengths:
292-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)