GgaEX0026787 @ galGal4
Exon Skipping
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8359304-8361068:+
Coord C1 exon
chr17:8359304-8359449
Coord A exon
chr17:8359883-8360063
Coord C2 exon
chr17:8360889-8361068
Length
181 bp
Sequences
Splice sites
3' ss Seq
AATGGATCATTCTTTTTCAGATG
3' ss Score
8.44
5' ss Seq
CAGGCATGT
5' ss Score
2.05
Exon sequences
Seq C1 exon
GGAGACAATAATCTCCTGAAACAGCAGCTTAAAGATCTTCAGAATCAGCTAAGCCATGCCGTTGGTAACTTGATACACCCCGAAGAAGTCCTAGCTCGTATAAATGAACTCAAGCAGAAGCTTCGGACAGGAGCAGGAGAGATTAA
Seq A exon
ATGTCAGAATTCAGCTGATGTTTTGGGGAAAAGCCTTGCAAGTCTGCAGAAAGAATTTAATAACATTCTTGCTGATACACAAAGGGAAAAAGAGAAAGCATGGGAAAGACAGAGACAATTGCAAGAGGAAATGGTATCCCAGAAGGAAAAACTGGAAGATATACAGGAAAAATATAGACAG
Seq C2 exon
GTTAAATCTGAAAACAGGCAGAATAAGAACAAGGTCCATCAGTTAGAGAACAAAATTCAACTCTTACGTGAAAAAATAAAGAGTATGGAAGAAATTCAGGGCCTGGCTGATCAACAGCTCCAAGAGGCAGATGAAGAAAAAGAGGCTATTCTTGCTCAACTAGAAGACTTGGAGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.186 C2=0.317
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATCAGCTAAGCCATGCCG
R:
CTTCATCTGCCTCTTGGAGCTG
Band lengths:
242-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]