DreEX6014117 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62740587-62741444:-
Coord C1 exon
chr5:62741299-62741444
Coord A exon
chr5:62740861-62741044
Coord C2 exon
chr5:62740587-62740742
Length
184 bp
Sequences
Splice sites
3' ss Seq
GCTTTACCTTTCTGTTACAGCTT
3' ss Score
9.99
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAGGAGAGAGACTGTCTAAAGGAGGAAGTAGAAGCTTTTCAGGATGATTTAAATAGCGTTCGGGAGCAGCTTCTGTGCCCTGAGAGTGTTGCTAGACATTTAGGAGAGCTGAGAAGAGGCATAACTACAGGACAAAAGGAATTAAG
Seq A exon
CTTTGAAGACCTCGGGGAACCAGTGAACAAAAAATTCATGGAGTTACAACAGGAGGTGCATCGTGTAGTATCTGCGGCTCAGAGAGATAGAGATGAGGCTCAGCGCTGTCAGGATAGGCTCACTGGAGAGATGAGCTCACTCAGAGAAAGACTCAGGAAGTACCAAGAGAGACATCAGACTCAG
Seq C2 exon
ACAACAGAGAGACGTGGTGAAGAAGCGGAGCTCCATAGATTGAGGGAAGAGCTGGAAGAAGCTCGTGAGCAGCACTACTTGATGGCGCAGCGTTTAGAGGAGACAGAGATCGACAGGGACCGTATACTTGGAGAGTTAGAGGAACAAGATAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492-'20-24,'20-21,21-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.694 C2=0.904
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAGAGACTGTCTAAAGGAGG
R:
CTGTCTCCTCTAAACGCTGCG
Band lengths:
251-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]