MmuEX6100819 @ mm10
Exon Skipping
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35143650-35145236:+
Coord C1 exon
chr2:35143650-35143795
Coord A exon
chr2:35144214-35144421
Coord C2 exon
chr2:35145057-35145236
Length
208 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTTTTTTTTCCATAGAAT
3' ss Score
10.91
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GATGACAACAGCCTGTTAAAGAAGCAGCTGAAAGAGTTTCAGAATCACCTTAACCATGTGGTTGATGGTCTGATTCACCCAGAGGAAGTAGCAGCTCGTGTAGACGAGCTAAGGAAAAGGTTGAAACTAGGAGCTGGGGAAATGAG
Seq A exon
AATCCATAGTCCTTCAGATGTCTTAGGGAAAAGTCTTGCTGACCTACAGAAACAGTTCAGTGAAATCCTTGCACGATCCCAGTGGGAAAAAGAGGAAGCCCAAGTTAGAGAGAGGAAGCTCCATGAAGAAATGGCTCTCCAGCAAGAGAAACTGGCGAATGGTCAAGAGGAGTTCAGGCAGGCCTGCGAAAGAGCACTTGAAGCCAGA
Seq C2 exon
ATTAAGTTTGATAAAAGACAACATAATGCAAGAATCCAGCAATTAGAAAATGAAATTCACTATTTGCAAGAGAACCTAAAAAGTATGGAAAAAATCCAAGGCCTTACAGACCTTCAGCTTCAGGAAGCAGATGAAGAGAAGGAAAGAATTCTGGCCCAACTCCAGGAGTTAGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-'38-37,'38-35,39-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.329 C2=0.058
Domain overlap (PFAM):
C1:
PF059116=DUF869=FE(19.6=100)
A:
PF059116=DUF869=FE(28.2=100)
C2:
PF059116=DUF869=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCTGTTAAAGAAGCAGCT
R:
TGGAGTTGGGCCAGAATTCTT
Band lengths:
303-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types