GgaEX0026787 @ galGal3

Exon Skipping

Gene

ENSGALG00000023482

Description

NA

Coordinates

chr17:9063043-9064807:+

Coord C1 exon

chr17:9063043-9063188

Coord A exon

chr17:9063622-9063802

Coord C2 exon

chr17:9064628-9064807

Length

181 bp

Sequences

Splice sites

3' ss Seq

AATGGATCATTCTTTTTCAGATG

3' ss Score

8.44

5' ss Seq

CAGGCATGT

5' ss Score

2.05

Exon sequences

Seq C1 exon

GGAGACAATAATCTCCTGAAACAGCAGCTTAAAGATCTTCAGAATCAGCTAAGCCATGCCGTTGGTAACTTGATACACCCCGAAGAAGTCCTAGCTCGTATAAATGAACTCAAGCAGAAGCTTCGGACAGGAGCAGGAGAGATTAA

Seq A exon

ATGTCAGAATTCAGCTGATGTTTTGGGGAAAAGCCTTGCAAGTCTGCAGAAAGAATTTAATAACATTCTTGCTGATACACAAAGGGAAAAAGAGAAAGCATGGGAAAGACAGAGACAATTGCAAGAGGAAATGGTATCCCAGAAGGAAAAACTGGAAGATATACAGGAAAAATATAGACAG

Seq C2 exon

GTTAAATCTGAAAACAGGCAGAATAAGAACAAGGTCCATCAGTTAGAGAACAAAATTCAACTCTTACGTGAAAAAATAAAGAGTATGGAAGAAATTCAGGGCCTGGCTGATCAACAGCTCCAAGAGGCAGATGAAGAAAAAGAGGCTATTCTTGCTCAACTAGAAGACTTGGAGAAAAGG

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000023482_CASSETTE1

Average complexity

S

Mappability confidence:

NA

Protein Impact

NA

No structure available

Features

Disorder rate (Iupred):

C1=0.122 A=0.295 C2=0.425

Domain overlap (PFAM):

C1:

PF059116=DUF869=FE(21.6=100),PF055827=Peptidase_U57=PD(44.9=89.8)

A:

PF138741=Nup54=PU(15.5=94.1),PF0026115=Tropomyosin=PU(14.8=94.1),PF060097=Laminin_II=PU(14.3=88.2),PF138701=DUF4201=PU(14.3=88.2),PF051038=DivIVA=PU(11.9=70.6),PF0003816=Filament=PU(14.3=88.2),PF0319410=LUC7=PU(14.0=88.2),PF094095=PUB=PU(7.8=35.3)

C2:

PF138741=Nup54=FE(57.3=100),PF0026115=Tropomyosin=FE(54.6=100),PF060097=Laminin_II=FE(56.2=100),PF138701=DUF4201=FE(56.2=100),PF051038=DivIVA=FE(58.4=100),PF0003816=Filament=FE(56.2=100),PF0319410=LUC7=FE(55.1=100),PF094095=PUB=FE(76.6=100)

Main Inclusion Isoform:

ENSGALP00000038078