MmuEX6100819 @ mm9
Exon Skipping
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:34999170-35000756:+
Coord C1 exon
chr2:34999170-34999315
Coord A exon
chr2:34999734-34999941
Coord C2 exon
chr2:35000577-35000756
Length
208 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTTTTTTTTCCATAGAAT
3' ss Score
10.91
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GATGACAACAGCCTGTTAAAGAAGCAGCTGAAAGAGTTTCAGAATCACCTTAACCATGTGGTTGATGGTCTGATTCACCCAGAGGAAGTAGCAGCTCGTGTAGACGAGCTAAGGAAAAGGTTGAAACTAGGAGCTGGGGAAATGAG
Seq A exon
AATCCATAGTCCTTCAGATGTCTTAGGGAAAAGTCTTGCTGACCTACAGAAACAGTTCAGTGAAATCCTTGCACGATCCCAGTGGGAAAAAGAGGAAGCCCAAGTTAGAGAGAGGAAGCTCCATGAAGAAATGGCTCTCCAGCAAGAGAAACTGGCGAATGGTCAAGAGGAGTTCAGGCAGGCCTGCGAAAGAGCACTTGAAGCCAGA
Seq C2 exon
ATTAAGTTTGATAAAAGACAACATAATGCAAGAATCCAGCAATTAGAAAATGAAATTCACTATTTGCAAGAGAACCTAAAAAGTATGGAAAAAATCCAAGGCCTTACAGACCTTCAGCTTCAGGAAGCAGATGAAGAGAAGGAAAGAATTCTGGCCCAACTCCAGGAGTTAGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-'25-29,'25-25,27-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.116 A=0.329 C2=0.050
Domain overlap (PFAM):
C1:
PF0383610=RasGAP_C=FE(29.5=100)
A:
PF059116=DUF869=FE(28.2=100)
C2:
PF059116=DUF869=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCTGTTAAAGAAGCAGCT
R:
TGGAGTTGGGCCAGAATTCTT
Band lengths:
303-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: