BtaEX6037835 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010179 | COL5A3
Description
collagen, type V, alpha 3 [Source:HGNC Symbol;Acc:HGNC:14864]
Coordinates
chr7:15772238-15775366:-
Coord C1 exon
chr7:15775159-15775366
Coord A exon
chr7:15774962-15775074
Coord C2 exon
chr7:15772238-15772306
Length
113 bp
Sequences
Splice sites
3' ss Seq
TCCCACTGGCTCTGCGGCAGGGG
3' ss Score
4
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
Exon sequences
Seq C1 exon
GGTCCCTCTGCGGAGCTGCACGGGCTGCGCCGGCGCCGACGTTCCCTGCTAGGCTTGGGAACCCCGGAGGGCGGCCTGGAGGAGGTGCTGGCCTCGATGGCGTCGCTGAGCTTCGAGTTAGAGCAGCTGCGGCGCCCTCCCGGCACGGCTGAGCGCCCGGGCCTCGTGTGCAAAGAGTTGCACCGCAGCCATCCGCATCTGCCAGATG
Seq A exon
GGGAATACTGGATTGATCCCAATCAAGGCTGCGCGCGGGATGCCCTCAGGGTTTTCTGTAACTTCACGGCAGGAGGAGAAACCTGCCTCTACCCAGACAAGAAGTTTGAGACC
Seq C2 exon
GTGAAACTGGCCTCTTGGTCCAAAGAAAAGCCAGGTGGCTGGTATAGCACATTCCGTCGAGGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010179-'75-88,'75-86,76-88=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(6.5=5.7),PF0141013=COLFI=PU(12.6=38.6)
A:
PF0141013=COLFI=FE(17.3=100)
C2:
PF0141013=COLFI=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGACGTTCCCTGCTA
R:
TTTTCCCTCGACGGAATGTGC
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]