MmuEX6064223 @ mm10
Exon Skipping
Gene
ENSMUSG00000004098 | Col5a3
Description
collagen, type V, alpha 3 [Source:MGI Symbol;Acc:MGI:1858212]
Coordinates
chr9:20771587-20772503:-
Coord C1 exon
chr9:20772305-20772503
Coord A exon
chr9:20772108-20772220
Coord C2 exon
chr9:20771587-20771655
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTGCTTCCGTGATAGGAG
3' ss Score
6.71
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGTTCTCCGGCTGAGGTGCATGGCCTGCGCAGGCGCCGATCTGTGACGGACACCCTGGAAGGTGGCCTGGAGGAGGTGATGGCCTCACTGAATTCACTGAGCTTGGAGCTGCAGCAGTTGCAGAGACCTCTGGGCACAGCCGAGAGCCCAGGCCTCATGTGCCGAGAGCTTCACCGCGACCACCCACACCTGCCCGATG
Seq A exon
GAGAGTACTGGATTGACCCCAATCAGGGCTGTGCACGTGACGCCTTCAAGGTTTTCTGCAACTTCACGGCAGGAGGTGAGACCTGTCTCTATCCAGACAAGAAGTTTGAGACG
Seq C2 exon
GTGAAACTGGCCTCGTGGTCCCGAGAGAAGCCTGGAGGCTGGTACAGCACCTTCCGCCGAGGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004098-'81-87,'81-86,83-87=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.910 A=0.079 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(7.9=7.5),PF0141013=COLFI=PU(12.7=40.3)
A:
PF0141013=COLFI=FE(17.4=100)
C2:
PF0141013=COLFI=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCGGCTGAGGTGCAT
R:
CTCGGCGGAAGGTGCTGTA
Band lengths:
258-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types