RnoEX0023452 @ rn6
Exon Skipping
Gene
ENSRNOG00000020525 | Col5a3
Description
collagen type V alpha 3 chain [Source:RGD Symbol;Acc:70922]
Coordinates
chr8:21787909-21788907:-
Coord C1 exon
chr8:21788709-21788907
Coord A exon
chr8:21788511-21788623
Coord C2 exon
chr8:21787909-21787977
Length
113 bp
Sequences
Splice sites
3' ss Seq
TGGGCCCGGTTCTGTGGCAGGAG
3' ss Score
5.21
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GGTTCCCCTGCTGAGGTGCACGGCCTGCGTAGGCGCCGCTCTGTGTTGGACACCCCAGAAGGTGGCCTGGAGGAAGTGATGGCCTCACTCAATTCACTGAGCTTGGAGCTGGAGCAGTTGCAGCGACCCCCAGGCACAGCCGAGAGCCCAGGCCTCATATGCCACGAGCTTCATCGAAACCACCCACACCTGCCGGACG
Seq A exon
GAGAGTACTGGATTGACCCCAATCAGGGCTGTGCACGGGACGCCTTCAAGGTCTTCTGCAACTTCACTGCCGGAGGTGAGACCTGTCTCTACCCAGACAAGAAGTTTGAGACG
Seq C2 exon
GTGAAACTGGCCTCCTGGTCCCGAGAAAAGCCTGGAGGTTGGTACAGCACCTTCCGCCGAGGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020525-'79-83,'79-82,81-83
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.910 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(7.9=7.5),PF0141013=COLFI=PU(12.7=40.3)
A:
PF0141013=COLFI=FE(17.4=100)
C2:
PF0141013=COLFI=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCCTGCTGAGGTGCA
R:
CTGTACCAACCTCCAGGCTTT
Band lengths:
244-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]