BtaEX6038334 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000032137 | PNPLA6
Description
neuropathy target esterase [Source:RefSeq peptide;Acc:NP_001070015]
Coordinates
chr7:17641047-17641890:+
Coord C1 exon
chr7:17641047-17641229
Coord A exon
chr7:17641397-17641515
Coord C2 exon
chr7:17641707-17641890
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCCCCTCATACCAGCAC
3' ss Score
7.09
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
CTGGAGCAGATGCTGGAGAACACGGCAGTGCGCGCCCTCAAGCAGCTGGTTCTGCTGCACCGCGAGGAGGGCGCAGGCCCCACACGCACTGTGGAGTGGCTCAACATGCGCAGCTGGTGCTCGGGACACCTGCATCTGCGCTGTCCGCGCCGCCTCTTCTCACGCCGCAGCCCGGCCAAGCTG
Seq A exon
CACGAGCTCTACGAGAAGGTTTTCTCGAGGCGCGCAGACCGGCACAGCGATTTCTCCCGCCTGGCGCGGGTGCTCACGGGCAACACCATCGCCCTGGTGCTGGGCGGGGGCGGAGCCAG
Seq C2 exon
GGGCTGCTCACACATCGGGGTGCTGAAGGCATTAGAGGAGGCGGGGGTCCCCGTTGACCTGGTGGGTGGCACGTCCATCGGCTCCTTCATCGGGGCCCTGTACGCCGAGGAGCGGAGCGCCAGCCGCACTAAACAGCGGGCCCGGGAGTGGGCTAAGGTGTGCGTTATGGGGAAGGGGTGGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032137-'35-32,'35-31,36-32=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0173417=Patatin=PU(5.2=20.0)
C2:
PF0173417=Patatin=FE(39.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGCTCAACATGCGCAG
R:
ATAACGCACACCTTAGCCCAC
Band lengths:
258-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]