DreEX6032905 @ danRer10
Exon Skipping
Gene
ENSDARG00000010773 | pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-050107-4]
Coordinates
chr1:45197196-45198079:-
Coord C1 exon
chr1:45197897-45198079
Coord A exon
chr1:45197661-45197779
Coord C2 exon
chr1:45197196-45197352
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTTTTGTCGAACAGAGA
3' ss Score
6.75
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTGGAGCAGATGTTGGAGAACACAGCAGTGCGGGCTCTGAAACAGCTTATTTTGCTGCACCGTGAGGATGGTCCGGGCCCGTCAAGAACAGTCGAATGGCTGAACATGCGAAGCTGGTGCTCTGGACACCTTCACCTGAAGTGTCCTCGTAGAGTCTTCTCACGAAGAAGCCCTACCAAACTG
Seq A exon
AGAGAGGTATATGAAAAAGTGTTTGAGAAGACTGCAGACAGACACAGCGATTTCTCACGGCTGGCCAGAGTACTCACAGGAAACAGCATTGCCCTTGTGCTCGGAGGAGGCGGAGCCAG
Seq C2 exon
GGGTTGCTCTCATGTTGGTGTAATCAAAGCCATGGAGGATACAGGAATTCCCATCGATATAGTGGGAGGAACCTCCATTGGCTCATTCATTGGTGCTCTGTATGCAGAGGAGAGAAGTGCAGTTCGGGTCAAGCAGAGAGCAAGAGAGTGGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010773-'28-30,'28-29,29-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0173417=Patatin=PU(4.8=20.0)
C2:
PF0173417=Patatin=FE(31.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGTCAAGAACAGTCGAAT
R:
CTCTTGCTCTCTGCTTGACCC
Band lengths:
253-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]