GgaEX0011215 @ galGal3
Exon Skipping
Gene
ENSGALG00000007881 | PNPLA6
Description
NA
Coordinates
chrUn_random:60657104-60657704:+
Coord C1 exon
chrUn_random:60657104-60657232
Coord A exon
chrUn_random:60657316-60657434
Coord C2 exon
chrUn_random:60657548-60657704
Length
119 bp
Sequences
Splice sites
3' ss Seq
AGTTGTTCTCCACCCCCAAGCGA
3' ss Score
2.58
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
NTGCACCGTGAGGATGGTCCCAGCCCATCGCGCACCGTTGAGTGGCTCAACATGCGGAGCTGGTGCTCGGGCCACCTGCACATCAAGTGCCCGCGCCGCGTCTTCTCCCGACGCAGCCCCGCCAAGCTG
Seq A exon
CGAGAGATGTACGAGAAGGTGTTCGCCAAGAGCGCCGATCGGCACAGCGACTTCTCCCGCTTGGCGCGGGTGCTCACCGGCAACACCATCGCCCTCGTTTTGGGTGGCGGCGGAGCCAG
Seq C2 exon
GGGCTGCTCCCACATCGGGGTGATCAAGGCGATGGAGGAGGCGGGGATCCCCATCGACATGGTTGGCGGCACCTCCATCGGATCCTTCATCGGCGCGCTGTACGCTGAGGAGCGCAGCGCCGTGCGCACCAAGCAGCGGGCACGCGAGTGGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007881-'21-22,'21-21,22-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0173417=Patatin=PU(4.8=20.0)
C2:
PF0173417=Patatin=FE(31.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAGGATGGTCCCAGC
R:
GTACAGCGCGCCGATGAAG
Band lengths:
226-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]