RnoEX0067725 @ rn6
Exon Skipping
Gene
ENSRNOG00000000977 | Pnpla6
Description
patatin-like phospholipase domain containing 6 [Source:RGD Symbol;Acc:1564611]
Coordinates
chr12:2089321-2095717:+
Coord C1 exon
chr12:2089321-2089503
Coord A exon
chr12:2090090-2090208
Coord C2 exon
chr12:2095416-2095717
Length
119 bp
Sequences
Splice sites
3' ss Seq
TATTCTCTTCTGGATCCCAGCAT
3' ss Score
3.7
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTGGAACAAATGCTGGAGAACACTGCCGTGCGTGCCTTGAAGCAGCTGGTTTTGCTGCACCGGGAGGAAGGCCCTGGGCCCACGCGCACTGTAGAGTGGCTCAACATGCGCAGCTGGTGCTCTGGACACCTGCACCTCCGCTGTCCTCGCCGCCTCTTCTCGCGTCGCAGCCCAGCTAAACTT
Seq A exon
CATGAGCTGTATGAGAAGGTTTTCTCCAGGCGTGCAGACCGTCACAGCGACTTCTCCCGCCTGGCACGAGTGCTCACAGGAAACACTATTGCTCTGGTGCTGGGTGGAGGCGGGGCCAG
Seq C2 exon
CGGATATCGCCCGCAGCATGGGGGCCAAAACGGTCATTGCCATCGACGTGGGAAGCCAGGATGAGACGGATCTCAGCACCTATGGGGACAGCCTGTCTGGCTGGTGGTTGCTGTGGAAACGGCTAAACCCCTGGGCAGACAAGGTAAAGGTTCCAGACATGGCTGAGATCCAGTCCCGCCTGGCGTATGTGTCCTGTGTGCGGCAGCTGGAAGTTGTCAAGTCTAGTTCCTATTGCGAGTACCTTCGTCCATCCATTGACTGCTTCAAGACCATGGACTTCGGGAAGTTTGACCAGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000977_MULTIEX1-23/31=22-29
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
PF0173417=Patatin=PU(4.8=20.0)
C2:
PF0173417=Patatin=PD(2.4=4.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTGAAGCAGCTGGTTTT
R:
CTGTCCCCATAGGTGCTGAGA
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]