BtaEX6038384 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009178 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:HGNC:11445]
Coordinates
chr7:17713568-17715267:+
Coord C1 exon
chr7:17713568-17713677
Coord A exon
chr7:17714378-17714473
Coord C2 exon
chr7:17715182-17715267
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCCACCCGCCCCACCTGTAGAGC
3' ss Score
7.76
5' ss Seq
GAGGTACCG
5' ss Score
8.5
Exon sequences
Seq C1 exon
GTGTGAGCGAGGAGAACCTGGCCAAGCTGATTCAGCACGCCAATGTGCAGGCACACAGCAACCTCATCAGGAACCTGGAGCAGCTGGGGGGCACTGTCACCAACCCTGGG
Seq A exon
AGCTCTGGGACCACCAGCCGACTGGAGCGGAGGGAGCGCTCAGAGCCCACCTATCAGCTGTCTCGCTGGACCCCGGTCATCAAGGATGTGATGGAG
Seq C2 exon
GATGCTGTGGAAGACCGGCTGGACCGGAAGCTGTGGCCCTTTGTGTCTGACCCTGCCCCCACATCCAGCTCCCAGGCTGCCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009178-'17-20,'17-18,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.469 C2=0.138
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.5=100)
A:
PF0099518=Sec1=FE(5.6=100)
C2:
PF0099518=Sec1=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGGCCAAGCTGATTCAG
R:
AGCCTGGGAGCTGGATGTG
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]