HsaEX6092491 @ hg38
Exon Skipping
Gene
ENSG00000076944 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:HGNC:11445]
Coordinates
chr19:7645197-7647247:+
Coord C1 exon
chr19:7645197-7645306
Coord A exon
chr19:7646249-7646344
Coord C2 exon
chr19:7647162-7647247
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTGCCCTGCCTGTAGGGC
3' ss Score
10.3
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GTGTGAGTGAGGAGAACCTGGCCAAGCTGATCCAGCATGCCAATGTACAGGCGCACAGCAGCCTCATCCGTAACCTGGAGCAGCTGGGAGGCACTGTCACCAACCCCGGG
Seq A exon
GGCTCGGGGACCTCCAGCCGGCTGGAGCCGAGAGAACGCATGGAGCCCACCTATCAGCTGTCCCGCTGGACCCCGGTCATCAAGGATGTAATGGAG
Seq C2 exon
GACGCCGTGGAGGACCGGCTGGACAGGAACCTGTGGCCCTTCGTATCCGACCCCGCCCCCACGGCCAGCTCCCAGGCCGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076944_CASSETTE4
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=0.461 C2=0.117
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(32.2=100)
A:
PF0099518=Sec1=FE(15.0=100)
C2:
PF0099518=Sec1=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGCATGCCAATGTACAGG
R:
CTGACAGCGGCCTGGGAG
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains