MmuEX0045624 @ mm9
Exon Skipping
Gene
ENSMUSG00000004626 | Stxbp2
Description
syntaxin binding protein 2 [Source:MGI Symbol;Acc:MGI:107370]
Coordinates
chr8:3639508-3641820:+
Coord C1 exon
chr8:3639508-3639617
Coord A exon
chr8:3641111-3641206
Coord C2 exon
chr8:3641735-3641820
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCACCTGGCCCCCTCTGTAGGGC
3' ss Score
8.71
5' ss Seq
GAGGTACAC
5' ss Score
5.99
Exon sequences
Seq C1 exon
GGGTGAGTGAGGAGAACCTGGCCAAGCTGATCCAGCATGCCAACGTGCAGTCGTACAGCAGCCTCATCCGGAATCTGGAGCAGCTGGGCGGCACTGTCACCAACTCCGCG
Seq A exon
GGCTCAGGGACCTCTAGCCGGCTGGAGCGGAGAGAGCGCATGGAGCCCACCTACCAGCTGTCTCGCTGGTCCCCAGTCATCAAGGATGTGATGGAG
Seq C2 exon
GATGTGGTGGAGGACCGGCTAGACCGAAAGCTGTGGCCCTTTGTGTCTGACCCTGCCCCTGTGCCTAGCTCCCAGGCAGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004626_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=0.385 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.7=100)
A:
PF0099518=Sec1=FE(5.8=100)
C2:
PF0099518=Sec1=FE(5.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACCTGGCCAAGCTGATC
R:
GACAGCTGCCTGGGAGCTAG
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: