DreEX6019009 @ danRer10
Exon Skipping
Gene
ENSDARG00000007603 | stxbp2
Description
syntaxin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2482]
Coordinates
chr3:53009932-53013330:+
Coord C1 exon
chr3:53009932-53010038
Coord A exon
chr3:53013050-53013148
Coord C2 exon
chr3:53013245-53013330
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGTCATGTGTTTCAGGGT
3' ss Score
11.57
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
GCATCGGTGAAGAGAACCTCACAAAGCTCATCCAGCATGCAAACGTTCAGCAGGACAAGAACATCATCACCAACCTGCAGCATCTAGGCTGCCCTATCATCACTGGG
Seq A exon
GGTGCTAATTCTGGAAAGAGTCTGCCTGACAGGAAAGAGCGCACAGAATCTACATATCAGCTCTCCCGCTGGATACCCGTCCTGAAAGATGTGATGGAG
Seq C2 exon
AATATCATTGATGACAAATGTGACAGGAAGCAGTGGCCATTCCTGTCTGAGCCTGCACCCATCACCACCACCGCAACTACAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007603-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.242 C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.3=100)
A:
PF0099518=Sec1=FE(5.8=100)
C2:
PF0099518=Sec1=FE(5.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCCAGCATGCAAACGTT
R:
CTGACTGTAGTTGCGGTGGTG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]