RnoEX0087374 @ rn6
Exon Skipping
Gene
ENSRNOG00000000994 | Stxbp2
Description
syntaxin binding protein 2 [Source:RGD Symbol;Acc:619967]
Coordinates
chr12:2188088-2200954:+
Coord C1 exon
chr12:2188088-2188197
Coord A exon
chr12:2189292-2189387
Coord C2 exon
chr12:2200536-2200954
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCCCCCAACCCCTTCTGTAGGGC
3' ss Score
7.54
5' ss Seq
GAGGTACAC
5' ss Score
5.99
Exon sequences
Seq C1 exon
GTGTGAGTGAGGAAAATCTGGCCAAGCTGATCCAGCATGCTAATGTGCAGTCCTACAGCAACCTCATCCGGAACCTGGAGCAGCTGGGGGGCACTGTCACCAACTCTGCG
Seq A exon
GGCTCAGGGACCTCTAGCCGGCTGGAGCGGAGAGAACGCATGGAGCCCACCTACCAGCTGTCTCGCTGGTCCCCAGTCATCAAGGACGTGATGGAG
Seq C2 exon
AACTGAGAGGCTATGGCAGACCCCATGGACACAGAACCAGGTACTTTTACATCTGACCTTTGAAAGGAAATGGCCCACCTCAGGTCTCTAGAAGTGCCTGGGAATGGAGACTCCACTGTCCAAAGCAGCTGTACACCATGTGGGTGATGGCCACTAAGGTTGCAAGACTACAGAAGCCGGGTGGAAAGGAGGAATGCACCACCTGAATCCACTTAACGCTGAAGAGGAAAGGCAAATCTCGGGCAGGGGCTGCGGGTCAGCAAGCTCTAGCGCATGCGCGGAGCAGTGCATCCCTGCCATCCCGGCGTGGAGAACGCAGGAGGGTCAGGCGCTTAAGGTCATTCTTGGCTACACAGTTCAAACTTGCGTAGGCTGCGTAAGAGCTCGGATTTAAATAAATGAATAAATATTAAAGTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000994_MULTIEX2-1/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=0.375 C2=NA
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(6.5=100)
A:
PF0099518=Sec1=FE(5.6=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGTCCTACAGCAACCTC
R:
AGTCTCCATTCCCAGGCACTT
Band lengths:
178-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]