HsaEX6092491 @ hg19
Exon Skipping
Gene
ENSG00000076944 | STXBP2
Description
syntaxin binding protein 2 [Source:HGNC Symbol;Acc:11445]
Coordinates
chr19:7710083-7712133:+
Coord C1 exon
chr19:7710083-7710192
Coord A exon
chr19:7711135-7711230
Coord C2 exon
chr19:7712048-7712133
Length
96 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTGCCCTGCCTGTAGGGC
3' ss Score
10.3
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
GTGTGAGTGAGGAGAACCTGGCCAAGCTGATCCAGCATGCCAATGTACAGGCGCACAGCAGCCTCATCCGTAACCTGGAGCAGCTGGGAGGCACTGTCACCAACCCCGGG
Seq A exon
GGCTCGGGGACCTCCAGCCGGCTGGAGCCGAGAGAACGCATGGAGCCCACCTATCAGCTGTCCCGCTGGACCCCGGTCATCAAGGATGTAATGGAG
Seq C2 exon
GACGCCGTGGAGGACCGGCTGGACAGGAACCTGTGGCCCTTCGTATCCGACCCCGCCCCCACGGCCAGCTCCCAGGCCGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076944-'22-25,'22-24,23-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=0.469 C2=0.103
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(17.4=100),PF146311=FancD2=PD(19.0=60.5)
A:
PF0099518=Sec1=FE(15.0=100)
C2:
PF0099518=Sec1=FE(24.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAGCATGCCAATGTACAGG
R:
CTGACAGCGGCCTGGGAG
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)