BtaEX6038730 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021018 | KHSRP
Description
KH-type splicing regulatory protein [Source:HGNC Symbol;Acc:HGNC:6316]
Coordinates
chr7:19264077-19265561:+
Coord C1 exon
chr7:19264077-19264126
Coord A exon
chr7:19264697-19264768
Coord C2 exon
chr7:19265504-19265561
Length
72 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTTTCTCCACCCAGTCA
3' ss Score
8.44
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GACTTCAATGACAGAAGAGTACCGAGTTCCAGACGGCATGGTGGGACTAA
Seq A exon
TCATCGGCAGAGGAGGTGAACAGATTAACAAAATCCAGCAGGACTCAGGCTGCAAAGTCCAAATCTCTCCAG
Seq C2 exon
ACAGCGGTGGCCTACCTGAACGCAGTGTGTCCTTGACAGGAGCCCCGGAATCTGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021018-'6-9,'6-7,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.800 C2=0.950
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
PF0001324=KH_1=FE(38.1=100)
C2:
PF0001324=KH_1=FE(30.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCAATGACAGAAGAGTACCGA
R:
AGATTCCGGGGCTCCTGTC
Band lengths:
103-175
Functional annotations
There are 1 annotated functions for this event
PMID: 19770516
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, mutation analysis. ELM ID: ELMI002009; ELM sequence: VQISPD; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]