RnoEX0046683 @ rn6
Exon Skipping
Gene
ENSRNOG00000047628 | Khsrp
Description
KH-type splicing regulatory protein [Source:RGD Symbol;Acc:621828]
Coordinates
chr9:10017808-10018860:+
Coord C1 exon
chr9:10017808-10017857
Coord A exon
chr9:10018012-10018083
Coord C2 exon
chr9:10018803-10018860
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTCTTTCATCCAGTCA
3' ss Score
9.22
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GACCTCAATGACAGAAGAGTATAGGGTTCCGGACGGCATGGTGGGCTTGA
Seq A exon
TCATTGGCAGAGGTGGTGAGCAGATAAACAAAATCCAGCAGGACTCAGGCTGCAAAGTTCAGATCTCACCAG
Seq C2 exon
ATAGTGGCGGCCTCCCTGAGCGCAGTGTGTCCCTGACTGGAGCACCAGAGTCTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047628-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.800 C2=0.950
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(20.6=72.2)
A:
PF0001324=KH_1=FE(38.1=100)
C2:
PF0001324=KH_1=FE(30.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGACAGAAGAGTATAGGGTTCCG
R:
TGGACAGACTCTGGTGCTCC
Band lengths:
103-175
Functional annotations
There are 1 annotated functions for this event
PMID: 19770516
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, mutation analysis. ELM ID: ELMI002009; ELM sequence: VQISPD; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]