DreEX0041335 @ danRer10
Exon Skipping
Gene
ENSDARG00000026489 | khsrp
Description
KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
Coordinates
chr1:54289741-54290641:-
Coord C1 exon
chr1:54290583-54290641
Coord A exon
chr1:54289902-54289973
Coord C2 exon
chr1:54289741-54289798
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATCTTTGTGTGTGTTTGTAGTCA
3' ss Score
7.3
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGTTCGTCCTTCGTCGATGACAGAAGAGTACAGAGTCCCTGATGGCATGGTTGGCCTCA
Seq A exon
TCATTGGTCGAGGTGGCGAGCAGATCAATAAGATCCAGCAGGACTCTGGTTGTAAAGTTCAGATCGCTCCAG
Seq C2 exon
ACAGTGGCGGTCTTCCAGACAGAAGTGTGTCCATCACAGGAGGCCCTGAAGCCATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026489-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.651 A=0.640 C2=0.932
Domain overlap (PFAM):
C1:
PF044029=SIMPL=PD(15.4=57.1),PF0001324=KH_1=PU(20.6=61.9)
A:
PF0001324=KH_1=FE(38.1=100)
C2:
PF0001324=KH_1=PD(32.1=90.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTCCTTCGTCGATGACAGA
R:
AGGGCCTCCTGTGATGGAC
Band lengths:
103-175
Functional annotations
There are 1 annotated functions for this event
PMID: 19770516
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, mutation analysis. ELM ID: ELMI002009; ELM sequence: VQISPD; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]