BtaEX6039771 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020489 | SEMA6A
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:HGNC Symbol;Acc:HGNC:10738]
Coordinates
chr7:38753121-38760372:+
Coord C1 exon
chr7:38753121-38753338
Coord A exon
chr7:38757081-38757212
Coord C2 exon
chr7:38760217-38760372
Length
132 bp
Sequences
Splice sites
3' ss Seq
TATGAAATGTCCCATCGCAGCAT
3' ss Score
5.39
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTAGTTTTCCCAAGGGTGGCTCAGGTTTGTAAGAATGACATGGGAGGGTCTCAGAGAGTGCTGGAGAAGCAGTGGACTTCTTTCCTGAAGGCTCGCCTCAATTGCTCCGTTCCCGGGGACTCCCATTTTTATTTCAACATCCTGCAGGCAGTTACCGATGTGATTCATATTCATGGCCGTGATGTTGTCCTGGCAACCTTCTCCACACCTTATAACAG
Seq A exon
CATCCCTGGATCTGCAGTGTGTGCCTATGACATGCATGACATCGCCAATGTCTTTACTGGGAGATTCAAAGAACAGAAGTCTCCAGATTCCACATGGACACCAGTTCCTGATGAACGCGTGCCTAAGCCCAG
Seq C2 exon
GCCAGGCTGCTGCGCCGGCTCCACCTCCTTAGAAAAATACACCACCTCCAATGAATTTCCTGACGACACCTTGAATTTCATCAAAACGCACCCGCTCATGGATGAGGCCGTGCCATCCATCATCAACAGGCCATGGTTCCTAAGGACGATGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020489-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.378 C2=0.075
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(16.5=100)
A:
PF0140314=Sema=FE(10.1=100)
C2:
PF0140314=Sema=FE(11.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCCTCAATTGCTCCGTTC
R:
TGTTGATGATGGATGGCACGG
Band lengths:
255-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]