GgaEX0002868 @ galGal3
Exon Skipping
Gene
ENSGALG00000002294 | SEMA6A
Description
NA
Coordinates
chrZ:70736843-70743212:+
Coord C1 exon
chrZ:70736843-70737060
Coord A exon
chrZ:70740213-70740344
Coord C2 exon
chrZ:70743057-70743212
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGGGAAATATCACTTTGCAGCAT
3' ss Score
4.28
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GTAGTTTTCCCGAGGGTGGCTCAGGTTTGCAAAAATGATATGGGAGGATCTCAGAGAGTGCTGGAAAAACAGTGGACTTCCTTCCTCAAGGCTCGTTTGAACTGCTCAGTTCCTGGCGATTCACACTTCTACTTCAACATACTGCAGGCAGTTACAGATGTTATCCATTTCAATGGCCGGGATGTTGTTTTAGCAACCTTCTCCACTCCATATAACAG
Seq A exon
CATCCCTGGCTCTGCAGTCTGTGCCTATGACATGCTTGACATTGCCAGTGTATTCACTGGGAGATTCAAAGAACAAAAGTCTCCAGACTCCACATGGACACCGGTTCCTGATGAAAGAGTTCCCAAACCCAG
Seq C2 exon
GCCTGGTTGTTGTGCTGGCTCTACATCATTAGAAAAATACGCAACCTCTAGTGAGTTCCCAGATGATACTCTGAACTTCATCAAAACACACCCACTGATGGATGAGGCTGTACCTTCCATTGTCAATCGACCCTGGTTCCTGAGAACGATGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002294-'8-11,'8-10,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.311 C2=0.042
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(16.7=100)
A:
PF0140314=Sema=FE(10.2=100)
C2:
PF0140314=Sema=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCTGGCGATTCACACT
R:
TCAGGAACCAGGGTCGATTGA
Band lengths:
255-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]