MmuEX6001495 @ mm10
Exon Skipping
Gene
ENSMUSG00000019647 | Sema6a
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A [Source:MGI Symbol;Acc:MGI:1203727]
Coordinates
chr18:47283309-47290193:-
Coord C1 exon
chr18:47289976-47290193
Coord A exon
chr18:47287423-47287554
Coord C2 exon
chr18:47283309-47283464
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTGTGAAATGTCCTTTGCAGCAT
3' ss Score
7.54
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTTGTTTTCCCTAGGGTGGCTCAGGTCTGTAAGAATGACATGGGAGGGTCTCAGAGAGTCCTGGAGAAGCAGTGGACATCTTTCCTGAAGGCTCGCCTGAACTGCTCGGTGCCTGGAGACTCTCATTTTTATTTCAATATACTCCAGGCAGTTACAGATGTGATTCGCATTAATGGCCGTGATGTTGTCTTGGCAACCTTTTCCACACCTTATAACAG
Seq A exon
CATCCCAGGTTCTGCAGTCTGTGCCTATGACATGCTTGACATTGCTAATGTTTTCACTGGGAGGTTCAAGGAACAGAAATCACCTGACTCTACCTGGACACCCGTTCCAGACGAACGAGTCCCTAAGCCCAG
Seq C2 exon
GCCAGGCTGTTGTGCTGGATCATCCTCTTTAGAAAAATATGCAACCTCCAATGAGTTTCCCGATGATACCCTGAACTTCATTAAGACGCATCCACTCATGGACGAGGCAGTGCCTTCCATCATCAACAGACCTTGGTTCCTGAGAACAATGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019647-'20-15,'20-14,21-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.338 C2=0.023
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(16.5=100)
A:
PF0140314=Sema=FE(10.1=100)
C2:
PF0140314=Sema=FE(11.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTTCCCTAGGGTGGCTCA
R:
AGGATGATCCAGCACAACAGC
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types