DreEX0065154 @ danRer10
Exon Skipping
Gene
ENSDARG00000011533 | sema6dl
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like [Source:ZFIN;Acc:ZDB-GENE-050417-171]
Coordinates
chr18:40386210-40387000:+
Coord C1 exon
chr18:40386210-40386427
Coord A exon
chr18:40386512-40386643
Coord C2 exon
chr18:40386845-40387000
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGAATTTCTTATACCTTCAGTAT
3' ss Score
6.18
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
GCGGTTTACTCCAGAGTGGCTCGGATCTGTAAAAATGACATGGGAGGGTCTCAGCGGGTGCTGGAAAAACACTGGACATCTTTTGTTAAGGCTCGGCTGAACTGTTCCGTTCCTGGAGAATCGTTTTTCTACTTTGACGTCCTTCAGGCCATTACCGATATCATCGACATTAATGGGGTGCCTTCTGTGGTTGGAGTTTTCACCACTCAGTTAAACAG
Seq A exon
TATTCCTGGATCTGCAGTGTGTGCCTTCTCCATGGTGGACATTGAGAAAGCCTTCCGCGGCCGTTTCAAAGAGCAGAAGACGCCAGATTCAGTGTGGACGCCATTTCCAGAGGAGAAACTGCCCAAGCCCAG
Seq C2 exon
ACCTGGCTGCTGTGCAGGACACGGTTCAGCAGAGTCCTACAAAACCTCCATCGAGTTTCCAGACGAGACCCTTCAATTCATCAAGTCACACCCACTCATGGACGCCTCGGTCCCCTCCATTGGAGACGAACCGTGGTTCACCAAAACAAGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011533-'12-14,'12-12,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.178 C2=0.038
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(16.8=100)
A:
PF0140314=Sema=FE(10.3=100)
C2:
PF0140314=Sema=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGTGGCTCGGATCTGTA
R:
TAGGACTCTGCTGAACCGTGT
Band lengths:
247-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]