Special

MmuEX6104539 @ mm9

Exon Skipping

Gene
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:MGI Symbol;Acc:MGI:2387661]
Coordinates
chr2:124483380-124484301:+
Coord C1 exon
chr2:124483380-124483597
Coord A exon
chr2:124483707-124483838
Coord C2 exon
chr2:124484146-124484301
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATGATTGTATCACTTTTCAGCAT
3' ss Score
7.48
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GCTGTGTATTCCCGCGTGGCTCGCATTTGTAAAAACGACATGGGTGGCTCACAGCGGGTCCTGGAGAAACACTGGACTTCCTTCCTTAAGGCTCGGCTGAACTGCTCCGTTCCTGGAGATTCCTTTTTCTACTTCGACGTCCTGCAGTCTATAACAGACATAATCCAAATCAATGGCATCCCCACTGTGGTTGGGGTCTTCACCACACAGCTCAACAG
Seq A exon
CATTCCTGGTTCTGCAGTCTGTGCCTTTAGCATGGACGACATTGAGAAAGTGTTCAAAGGGCGGTTCAAAGAGCAGAAAACCCCAGACTCTGTTTGGACAGCAGTTCCCGAAGACAAAGTACCAAAACCAAG
Seq C2 exon
GCCTGGCTGTTGTGCCAAACACGGCCTCGCAGAAGCTTACAAGACCTCCATCGACTTTCCAGATGACACCCTGGCTTTCATCAAGTCCCACCCGCTGATGGACTCTGCCGTCCCACCCATTGCCGATGAGCCCTGGTTCACAAAGACACGGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027200-'19-25,'19-24,20-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):

C1:
PF0140314=Sema=FE(16.9=100)
A:
PF0140314=Sema=FE(10.4=100)
C2:
PF0140314=Sema=FE(12.2=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTCGACGTCCTGCAGTCT
R:
ACCCGTGTCTTTGTGAACCAG
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]