GgaEX7007428 @ galGal4
Exon Skipping
Gene
ENSGALG00000004844 | SEMA6D
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr10:9408352-9409176:+
Coord C1 exon
chr10:9408352-9408569
Coord A exon
chr10:9408678-9408809
Coord C2 exon
chr10:9409021-9409176
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTCTTATTTTACAGCAT
3' ss Score
11.23
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GCTGTGTATTCCCGTGTGGCACGCATATGCAAAAATGACATGGGGGGTTCCCAGAGAGTACTGGAAAAACATTGGACATCCTTTCTGAAAGCTCGGCTCAACTGCTCCGTTCCTGGGGATTCGTTCTTCTACTTTGATGTTCTACAGTCTATCACGGACATAATAGAAATCAATGGAATCCCCACGGTTGTCGGTGTATTCACTACACAGCTTAACAG
Seq A exon
CATCCCTGGTTCAGCAGTGTGTGCTTTCAGCATGGATGACATTGAGAAGGTCTTCAAAGGGAGATTCAAAGAACAAAAAACTCCTGACTCTGTTTGGACAGCTGTACCTGAAGACAAGGTACCAAAGCCAAG
Seq C2 exon
ACCTGGCTGCTGTGCAAAACATGGCCTAGCAGAAGCTTACAAAACCTCCATTGATTTCCCAGACGAAACATTGTCCTTCATCAAATCTCATCCTTTGATGGATTCAGCTGTTCCCTCAATCATTGAGGAGCCTTGGTTTACCAAAACACGCGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004844-'9-13,'9-12,11-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(16.9=100)
A:
PF0140314=Sema=FE(10.3=100)
C2:
PF0140314=Sema=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTATTCCCGTGTGGCAC
R:
TAGGCCATGTTTTGCACAGCA
Band lengths:
245-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]