BtaEX6053993 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016800 | SEMA6D
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr10:62873063-62874009:-
Coord C1 exon
chr10:62873792-62874009
Coord A exon
chr10:62873561-62873692
Coord C2 exon
chr10:62873063-62873218
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATGCTGTTCCTCTTTTTCAGCAT
3' ss Score
10.28
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GCTGTCTATTCACGTGTGGCCCGCATATGTAAAAACGACATGGGTGGCTCCCAGCGCGTCCTGGAGAAGCACTGGACTTCGTTTCTGAAGGCTCGGCTTAACTGTTCTGTCCCTGGAGATTCCTTTTTCTACTTTGATGTTCTGCAGTCTATTACAGACATAATACAAATCAATGGCATTCCCACAGTGGTAGGGGTTTTCACCACACAGCTCAACAG
Seq A exon
CATTCCTGGTTCCGCAGTCTGTGCGTTTAGCATGGATGACATTGAAAAAGTATTCAAAGGACGGTTTAAAGAACAGAAAACTCCAGATTCTGTTTGGACAGCGGTCCCTGAAGACAAAGTACCAAAGCCAAG
Seq C2 exon
GCCTGGGTGTTGTGCAAAGCACGGTCTTGCGGAAGCATATAAAACCTCCATCGATTTCCCGGATGAAACCCTGTCATTCATCAAATCCCACCCCCTGATGGACTCGGCCGTCCCACCCATTGCCGACGAACCCTGGTTCACAAAGACTCGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016800-'16-11,'16-10,17-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(16.9=100)
A:
PF0140314=Sema=FE(10.4=100)
C2:
PF0140314=Sema=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGAGAAGCACTGGACTT
R:
TCAGGGGGTGGGATTTGATGA
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]