RnoEX6018830 @ rn6
Exon Skipping
Gene
ENSRNOG00000004812 | Sema6d
Description
semaphorin 6D [Source:RGD Symbol;Acc:1310910]
Coordinates
chr3:116947649-116948589:+
Coord C1 exon
chr3:116947649-116947866
Coord A exon
chr3:116947985-116948116
Coord C2 exon
chr3:116948434-116948589
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTCCCCCTTTACAGCAT
3' ss Score
10.78
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GCTGTGTACTCCCGAGTGGCCCGCATTTGTAAAAACGACATGGGTGGCTCACAGCGGGTCCTGGAGAAACACTGGACTTCCTTCCTGAAGGCTCGGCTTAACTGCTCAGTCCCTGGAGATTCCTTTTTCTACTTCGATGTTCTGCAGTCCATCACAGACATCATCCAAATCAATGGCATCCCCACCGTGATCGGGGTCTTCACCACGCAGCTCAACAG
Seq A exon
CATTCCTGGCTCTGCAGTCTGTGCCTTTAGCATGGACGACATTGAGAAAGTGTTCAAAGGGCGGTTCAAAGAGCAGAAAACCCCAGACTCTGTTTGGACAGCGGTTCCTGAAGACAAAGTACCAAAACCAAG
Seq C2 exon
GCCTGGCTGTTGTGCCAAACATGGCCTCGCGGAAGCTTACAAAACCTCCATCGACTTTCCAGATGATACCCTGTCTTTCATCAAGTCCCACCCGCTGATGGACTCCGCTGTCCCACCCATTGCTGATGAGCCCTGGTTCACAAAGACTCGGGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004812-'26-20,'26-18,27-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(17.8=100)
A:
PF0140314=Sema=FE(10.9=100)
C2:
PF0140314=Sema=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGTCCCTGGAGATTCCT
R:
CTCATCAGCAATGGGTGGGAC
Band lengths:
245-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]